Function reference • metID

All functions
`annotate_result`	A metIdentifyClass object.
`construct_database()`	Construct in-house or public MS2 database for metID.
`construct_massbank_database()`	Construct public MS2 database from massbank with msp format.
`construct_mona_database()`	Construct public MS2 database from MoNA with msp format.
`correct_database_rt()`	Correct RTs of metabolites in database using internal standard list
`databaseClass-class`	An S4 class to represent MS1 or MS2 database.
`databaseConstruction()`	Construct in-house or public MS2 database for metID.
`filterIden()`	Filter identifications according to m/z error, RT error, MS similarity and total score
`filter_adducts()`	Filter adducts.
`filter_identification()`	Filter identifications according to m/z error, RT error, MS similarity and total score
`getIdenInfo()`	Get identification information from a metIdentifyClass object
`getIdentificationTable()`	Get identification table from a metIdentifyClass object
`getIdentificationTable2()`	Get identification table from a mzIdentifyClass object
`getMS2spectrum()`	Get MS2 spectra of peaks from databaseClass object
`getMS2spectrum2Object()`	Get spectra of peaks from metIdentifyClass object
`getParams()`	Get parameters from a metIdentifyClass object
`getParams2()`	Get parameters from a mzIdentifyClass object
`get_iden_info()`	Get identification information from a metIdentifyClass object
`get_identification_table()`	Get identification table from a metIdentifyClass object
`get_identification_table_all()`	get_identification_table_all
`get_ms2_spectrum()`	Get MS2 spectra of peaks from databaseClass object
`get_ms2_spectrum_from_object()`	Get spectra of peaks from metIdentifyClass object
`get_parameters()`	Get parameters from a metIdentifyClass object
`get_parameters_metID()`	Get parameters from a metIdentifyClass object
`hilic.neg`	HILIC negative mode adduct table
`hilic.pos`	HILIC positive mode adduct table
`identifyPeak()`	Identify metabolites based on MS1 or MS/MS database
`identify_metabolite_all()`	Identify metabolites using multiple databases one time
`identify_metabolites()`	Identify metabolites based on MS1 or MS/MS database
`identify_metabolites_params()`	Generate the parameter list for identify_metabolites function
`identify_ms2_only()`	Identify metabolites based on MS/MS database
`identify_single_peak()`	Identify single peak based on database.
`metID()`	Show the base information of metID pacakge
`metID_logo()`	Show the base information of metID pacakge
`metIdentify()`	Identify metabolites based on MS/MS database.
`metIdentify4all()`	Identify metabolites using multiple databases one time
`metIdentifyClass-class`	An S4 class to represent annotation result.
`metIdentifyParam()`	Generate the parameter list for metIdentify function
`ms2plot()`	Get MS2 match plots from a metIdentifyClass object
`msDatabase_hilic0.0.2`	Michael Snyder lab RPLC database
`msDatabase_rplc0.0.2`	Michael Snyder lab RPLC database
`mzIdentify()`	Identify peaks based on MS1 database
`mzIdentifyParam()`	Generate the mzIdentify parameter list
`readMGF()`	readMGF
`readMSP()`	readMSP
`readMSP_MoNA()`	readMSP_MoNA
`readMZXML()`	readMZXML
`read_mgf()`	read_mgf
`read_mgf_experiment()`	read_mgf_experiment
`read_mgf_gnps()`	read_mgf_gnps
`read_mgf_mona()`	read_mgf_mona
`read_msp()`	read_msp
`read_msp_database()`	read_msp_database
`read_msp_gnps()`	read_msp_gnps
`read_msp_mona()`	read_msp_mona
`read_mzxml()`	read_mzxml
`rp.neg`	Reverse phase negative mode adduct table
`rp.pos`	Reverse phase positive mode adduct table
`trans2newStyle()`	Transform old style identification table to new style
`trans_to_new_style()`	Transform old style identification table to new style
`whichHasIden()`	Get the peak names which have identifications
`which_has_identification()`	Get the peak names which have identifications
`write_mgf_gnps()`	Export metID database to mgf (gnps format)
`write_mgf_massbank()`	Export metID database to mgf (MassBank format)
`write_mgf_mona()`	Export metID database to mgf (mona format)
`write_msp_gnps()`	Export metID database to msp (gnps format)
`write_msp_massbank()`	Export metID database to msp (MassBank format)
`write_msp_mona()`	Export metID database to msp (mona format)

Reference

All functions