Get parameters from a metIdentifyClass object
Source:R/function4metIdentifyClass.R
get_parameters.RdGet parameters from a metIdentifyClass object.
![[Deprecated]](figures/lifecycle-deprecated.svg)
get_parameters(object)Arguments
- object
A metIdentifyClass object.
Value
A data frame contains all the parameters of this metIdentifiyClass object.
Examples
data("annotate_result", package = "metID")
get_parameters(annotate_result)
#> `get_parameters()` is deprecated, use `get_parameters_metID()`.
#> # A tibble: 17 × 3
#> Parameter Meaning Value
#> <chr> <chr> <chr>
#> 1 ms1.ms2.match.mz.tol MS1 features & MS spectra matching mz tolerance (… 25
#> 2 ms1.ms2.match.rt.tol MS1 features & MS spectra matching RT tolerance (… 10
#> 3 ms1.match.ppm MS1 match tolerance (ppm) 15
#> 4 ms2.match.ppm MS2 fragment match tolerance (ppm) 30
#> 5 ms2.match.tol MS2 match tolerance 0.5
#> 6 rt.match.tol RT match tolerance (s) 30
#> 7 polarity Polarity posi…
#> 8 ce Collision energy all
#> 9 column Column rp
#> 10 ms1.match.weight MS1 match weight 0.25
#> 11 rt.match.weight RT match weight 0.25
#> 12 ms2.match.weight MS2 match weight 0.5
#> 13 path Work directory ./ex…
#> 14 total.score.tol Total score tolerance 0.5
#> 15 candidate.num Candidate number 3
#> 16 database MS2 database msDa…
#> 17 threads Thread number 2