Xiaotao Shen

Xiaotao Shen

Postdoctoral Research Fellow

Stanford University

👤 About me

I am a Postdoctoral Research Fellow in Prof. Michael Snyder’s lab at Stanford University School of Medicine. My overarching research interests are bioinformatics algorithms development for multi-omics data, and their application to precision medicine. Specifically, I am interested in bioinformatics algorithm development, including 1) Comprehensive analysis workflow and deep learning for LC-MS data, 2) Metabolic network analysis, 3) Wearable and multi-omics data integration, and 4) microbiome and metabolome data integration. I also employed the developed bioinformatics algorithms as a unique systems biology approach to study the potential biomarkers and mechanisms of 1) pregnancy and related diseases, 2) aging and related diseases, and 3) cancer. More tools and projects I developed can be found in the Projects part.

Now I am also the member of Stanford Chinese Postdoctral Association (SCPA). Feel free to let me know if you want to join us and contribute to the amazing community!

🐶 🏫 🈸 😄 👊 ✊ 👨‍👩‍👦 🐼 🌏 🎉 🇨🇳

📚 Statistics

Data from Google Scholar (9/21/2023)
34

Publications

1,243

Citations

13

H-index

🧑‍🎓 Experiences

 
 
 
 
 
Stanford University
Postdoctoral Research Fellow
April 2019 – Present Palo Alto, California 🇺🇸

👨‍🏫 Advisor: Prof. Michael P. Snyder

🧪 Research:

  • Metabolomics and System Biology
  • Multi-omics data analysis and their application in healthcare
  • Software and algorithm development for metabolomics and other omics data
 
 
 
 
 
Stanford Chinese Postdoctoral Association
Co-chair
August 2021 – July 2022 Palo Alto, California 🇺🇸
 
 
 
 
 
Chinese Academy of Sciences
Research Scientist
January 2019 – March 2019 Shanghai, China 🇨🇳
👨‍🏫 Advisor: Prof. Zheng-Jiang Zhu
 
 
 
 
 
Chinese Academy of Sciences
Ph.D.
September 2013 – December 2018 Shanghai, China 🇨🇳

👨‍🏫 Advisor: Prof. Zheng-Jiang Zhu

🧪 Research:

  • Metabolomics and System Biology
  • Bioinformatics
 
 
 
 
 
Inner Mongolia University
B.S.
September 2009 – July 2013 Hohhot, Inner Mongolia, China 🇨🇳

📃 Publications

🔗 Google scholar

microbiomedataset A tidyverse-style framework for organizing and processing microbiome data
microbiomedataset A tidyverse-style framework for organizing and processing microbiome data
microbiomedataset A tidyverse-style framework for organizing and processing microbiome data
Semi-supervised Cooperative Learning for Multiomics Data Fusion
Semi-supervised Cooperative Learning for Multiomics Data Fusion
Semi-supervised Cooperative Learning for Multiomics Data Fusion
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)
Multi-omics microsampling for the profiling of lifestyle-associated changes in health
Multi-omics microsampling for the profiling of lifestyle-associated changes in health
Multi-omics microsampling for the profiling of lifestyle-associated changes in health
massDatabase utilities for the operation of the public compound and pathway database
massDatabase utilities for the operation of the public compound and pathway database
massDatabase utilities for the operation of the public compound and pathway database

💻 Projects

*

📥 Contact

🏅 Awards

CASMS
Young Investigator Award 2023
Chinese American Society of Mass Spectrometry
Stanford
SPORR 2023 Rigor and Reproducibility Awards
Stanford Program on Research Rigor & Reproducibility
ISGlobal
Winner Selected by the Event Committee
Exposome Data Challenge Event
metabolomics_society
Student Travel Award for Oral Presentation
The International Metabolomics Society
org
Student Travel Award for Oral Presentation
Journal Metabolites
China
China National Scholarship
Ministry of Education of the People’s Republic of China
org
Award for Outstanding Youth Report
The 3rd China MS Analysis Conference
CAS
Merit Student
University of Chinese Academy of Sciences
org
Award for Outstanding Youth Report
The 34th China MS Society Conference
org
Inner Mongolia Outstanding Graduate
Inner Mongolia Autonomous Region
IMU
National Encouragement Scholarship
Inner Mongolia University

🦮 Academic Service

 
 
 
 
 
Phenomics
Member of Youth Editorial Board
February 2023 – Present China 🇨🇳
 
 
 
 
 
Brain-X
Member of Youth Editorial Board
January 2023 – Present China 🇨🇳
 
 
 
 
 
iMeta
Member of Youth Editorial Board
July 2022 – Present China 🇨🇳
 
 
 
 
 
npj women's health
Member of Editorial Board
August 2023 – Present UK 🇬🇧

🤝 Collaborators

Academia

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Dr. Chuchu Wang

Postdoc
Stanford University

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Dr. Daniel Panyard

Postdoc
Stanford University

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Dr. Liang Liang

Research Scientist
Stanford University

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Dr. Nasim Barapour

Postdoc
Stanford University

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Dr. Wei Shao

Assistant Professor
University of Florida

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Dr. Xin Zhou

Postdoc
Stanford University

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Dr. Yan Hong

Postdoc
Yale University

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Prof. Caroline Johnson

Associate Professor
Yale University

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Prof. Michael Snyder

Professor
Stanford University

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Prof. Peng Gao

Assistant Professor
University of Pittsburgh

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Prof. Sai Zhang

Assistant Professor
University of Florida

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Prof. Zheng-Jiang Zhu

Professor
Chinese Academy of Sciences

Industry

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Dr. Daniel Hornburg

Vice President
Seer

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Dr. Ryan Kellogg

Founder/CEO
RTHM

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Dr. Si Wu

Research Scientist
AbbVie

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Dr. Songjie Chen

Research Scientist
Merck

Girl in a jacket

Map of Collaborators

📸 Photos