Xiaotao Shen

Xiaotao Shen

Nanyang Assistant Professor

Nanyang Technological University Singapore

๐Ÿ‘ค ABOUT ME

I am an Assistant Professor (Tenure Track) at Lee Kong Chian School of Medicine, Nanyang Technological University Singapore (NTU). My research focus on method development for multi-omics data integration and its application to precision medicine. I am looking for highly motivated postdocs and students to join my lab. Please feel free to contact me if you are interested (xiaotao.shen@ntu.edu.sg). The Shen Lab website is here: https://www.shen-lab.org/.

My overarching research interests are bioinformatics algorithms development for multi-omics data, and their application to precision medicine. Specifically, I am interested in bioinformatics algorithm development, including:

  1. Comprehensive analysis workflow and deep learning for LC-MS data,

  2. Metabolic network analysis,

  3. Wearable and multi-omics data integration,

  4. microbiome and metabolome data integration.

I also employed the developed bioinformatics algorithms as a unique systems biology approach to study the potential biomarkers and mechanisms of 1) pregnancy and related diseases, 2) aging and related diseases, and 3) cancer. More tools and projects I developed can be found in the Projects part.

๐Ÿถ ๐Ÿซ ๐Ÿˆธ ๐Ÿ˜„ ๐Ÿ‘Š โœŠ ๐Ÿ‘จโ€๐Ÿ‘ฉโ€๐Ÿ‘ฆ ๐Ÿผ ๐ŸŒ ๐ŸŽ‰ ๐Ÿ‡จ๐Ÿ‡ณ

๐Ÿ“š Statistics

Data from Google Scholar (07/06/2024)
43

Publications

1,672

Citations

18

H-index

๐Ÿง‘โ€๐ŸŽ“ EXPERIENCES

 
 
 
 
 
Nanyang Technological University Singapore
Nanyang Assistant Professor (Tenure Track)
May 2024 โ€“ Present Singapore ๐Ÿ‡ธ๐Ÿ‡ฌ

๐Ÿงช Research:

  • Host and microbe interaction
  • Multi-omics data analysis and their application in healthcare
  • Software and algorithm development for metabolomics and other omics data
  • Aging and Aging-related diseases
  • Human pregnancy and pregnancy-related diseases
 
 
 
 
 
Stanford University
Research Scientist
December 2023 โ€“ April 2024 Palo Alto, California ๐Ÿ‡บ๐Ÿ‡ธ

๐Ÿ‘จโ€๐Ÿซ Advisor: Prof. Michael P. Snyder

๐Ÿงช Research:

  • Metabolomics and System Biology
  • Multi-omics data analysis and their application in healthcare
  • Software and algorithm development for metabolomics and other omics data
 
 
 
 
 
Stanford University
Postdoctoral Research Fellow
April 2019 โ€“ December 2023 Palo Alto, California ๐Ÿ‡บ๐Ÿ‡ธ

๐Ÿ‘จโ€๐Ÿซ Advisor: Prof. Michael P. Snyder

๐Ÿงช Research:

  • Metabolomics and System Biology
  • Multi-omics data analysis and their application in healthcare
  • Software and algorithm development for metabolomics and other omics data
 
 
 
 
 
Stanford Chinese Postdoctoral Association
Co-chair
August 2021 โ€“ July 2022 Palo Alto, California ๐Ÿ‡บ๐Ÿ‡ธ
 
 
 
 
 
Chinese Academy of Sciences
Research Scientist
January 2019 โ€“ March 2019 Shanghai, China ๐Ÿ‡จ๐Ÿ‡ณ
๐Ÿ‘จโ€๐Ÿซ Advisor: Prof. Zheng-Jiang Zhu
 
 
 
 
 
Chinese Academy of Sciences
Ph.D.
September 2013 โ€“ December 2018 Shanghai, China ๐Ÿ‡จ๐Ÿ‡ณ

๐Ÿ‘จโ€๐Ÿซ Advisor: Prof. Zheng-Jiang Zhu

๐Ÿงช Research:

  • Metabolomics and System Biology
  • Bioinformatics
 
 
 
 
 
Inner Mongolia University
B.S.
September 2009 โ€“ July 2013 Hohhot, Inner Mongolia, China ๐Ÿ‡จ๐Ÿ‡ณ

๐Ÿ… AWARDS

CASMS
Young Investigator Award 2023
Chinese American Society of Mass Spectrometry
Stanford
SPORR 2023 Rigor and Reproducibility Awards
Stanford Program on Research Rigor & Reproducibility
ISGlobal
Winner Selected by the Event Committee
Exposome Data Challenge Event
metabolomics_society
Student Travel Award for Oral Presentation
The International Metabolomics Society
org
Student Travel Award for Oral Presentation
Journal Metabolites
China
China National Scholarship
Ministry of Education of the Peopleโ€™s Republic of China
org
Award for Outstanding Youth Report
The 3rd China MS Analysis Conference
CAS
Merit Student
University of Chinese Academy of Sciences
org
Award for Outstanding Youth Report
The 34th China MS Society Conference
org
Inner Mongolia Outstanding Graduate
Inner Mongolia Autonomous Region
IMU
National Encouragement Scholarship
Inner Mongolia University

๐Ÿฆฎ ACADEMIC SERVICE

 
 
 
 
 
Phenomics
Member of Youth Editorial Board
February 2023 โ€“ Present China ๐Ÿ‡จ๐Ÿ‡ณ
 
 
 
 
 
Brain-X
Member of Youth Editorial Board
January 2023 โ€“ Present China ๐Ÿ‡จ๐Ÿ‡ณ
 
 
 
 
 
iMeta
Member of Youth Editorial Board
July 2022 โ€“ Present China ๐Ÿ‡จ๐Ÿ‡ณ
 
 
 
 
 
npj women's health
Member of Editorial Board
August 2023 โ€“ Present UK ๐Ÿ‡ฌ๐Ÿ‡ง

๐Ÿ“ฅ CONTACT